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The Data Integration Core project support includes development of resources and tools to facilitate analysis, visualization, integration, querying and sharing of research data.


Biological Resources

A. baumannii AB5075-UW Transposon Mutant Library Web tool to display location and information about the transposon mutants. Search for mutants by gene and add to "shopping cart" to facilitate ordering.

Web Tools

Prokaryotic Genome Analysis Tool (PGAT) Web-based tool for SNP analysis and gene comparison of closely related bacterial strains
Prokaryotic Sequence homology Analysis Tool (PSAT) Web-based tool for examining sequence homologs and their genomic regions across multiple bacterial genomes
XLinkDB 2.0

A Database and set of tools to store, visualize and predict protein interaction topologies. Provided by the Protein Interaction Technology Core

Software Utilities

Genome Sequencing Software Utilities Software utilities for genome sequencing assembly
Tn-seq Software

A pipeline for processing next-generation DNA sequence files (fastq files) generated by Tn-seq methods (transposon-insertion sequencing)